PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01676.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 450aa    MW: 49105.8 Da    PI: 8.1648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01676.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06126145626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C ++ r G C +Gd+C++ H+
  Migut.B01676.1.p 126 CGDWVR-GNCVRGDKCRYVHS 145
                       99****.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-61946IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8212047IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-52046IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-72145IPR000571Zinc finger, CCCH-type
SMARTSM003560.035118146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5123145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4125143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.4E-46144440IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0013151190IPR001680WD40 repeat
SuperFamilySSF509784.39E-45152442IPR017986WD40-repeat-containing domain
PfamPF004006.1E-4155190IPR001680WD40 repeat
PROSITE profilePS5008211.277158199IPR001680WD40 repeat
PROSITE profilePS5029410.759158199IPR017986WD40-repeat-containing domain
PROSITE patternPS006780177191IPR019775WD40 repeat, conserved site
PRINTSPR003205.7E-7177191IPR020472G-protein beta WD-40 repeat
SMARTSM003208.7230267IPR001680WD40 repeat
PROSITE profilePS5029421.595237361IPR017986WD40-repeat-containing domain
SMARTSM003201.8E-6274312IPR001680WD40 repeat
PfamPF004000.012279312IPR001680WD40 repeat
PROSITE profilePS5008211.478281321IPR001680WD40 repeat
PROSITE patternPS006780299313IPR019775WD40 repeat, conserved site
PRINTSPR003205.7E-7299313IPR020472G-protein beta WD-40 repeat
SMARTSM003204.3E-7315352IPR001680WD40 repeat
PfamPF004001.1E-5317352IPR001680WD40 repeat
PROSITE profilePS5008210.408322361IPR001680WD40 repeat
PRINTSPR003205.7E-7339353IPR020472G-protein beta WD-40 repeat
SMARTSM0032011358399IPR001680WD40 repeat
SMARTSM0032058402439IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEVMAAKKVS VFHRMGAQPA KKSVVCRYWA NGNCIKGDNC DYFHGERPPP QTGYVHYNQA  60
RSKTWTNTNS SCNPKYGNGS SLSNKGGKFS NASYQKPPRK VSTKSLTFVR SELEKNDTRK  120
APIKQCGDWV RGNCVRGDKC RYVHSWFSGS GFAMLAKLEG HAKGITGIAL PSGCDKLYSC  180
SKDKSIRAWD CNSGQLAGSV STVGEVGCLI NEGAWLFVGL PNVVKAWNIQ NQAEFFVNAP  240
GGLVCSLALD NDKLFAGMED GTILVWKLNA ESNTPELIAM LKEHHGAVCT LVVGANNRLY  300
SGSKDSTIKV WDTYNLQCLH TLSGHTKDVT SLVCWDSYLI SASLDKTLKV WSATESGTIK  360
VDYEIKDDYE VNALCGIHDA EGKPILLCAY SDNTVRLYEL PSFTERGRIF SKGKVEVIEV  420
GIDGLFFTGD ANGDVSVWKM IGAPCMAES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201344438325Tako8
6g6n_A2e-201344438325Tako8
6g6n_B2e-201344438325Tako8
6g6n_C2e-201344438325Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01676.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843644.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2
TrEMBLA0A022QXI20.0A0A022QXI2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-131zinc finger WD40 repeat protein 1