PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B01852.1.p
Common NameLOC105963893, MIMGU_mgv1a009713mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 334aa    MW: 37705.8 Da    PI: 7.1886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B01852.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12194219126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Migut.B01852.1.p 194 YQPDICKDYKETGYCGYGDSCKFMHD 219
                       67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9192224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7193220IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12194224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.7E-14261314IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.66E-13272315No hitNo description
PfamPF139208.5E-9272315No hitNo description
PROSITE profilePS5008910.645273311IPR001841Zinc finger, RING-type
CDDcd001621.06E-8273314No hitNo description
SMARTSM001843.1E-4273310IPR001841Zinc finger, RING-type
PROSITE patternPS005180288297IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQGDEADAGG AAAEEGLPVC NFFRKPAKSK NVRKRTAIQE GEDEDEDSKL GSSVVYNKKK  60
PPAGDNKLHF SSGSQKTSKE SEVEKSKSSV FEYESSKQIQ VQNDSRATAT LETETDFSRD  120
SRAIRERVLK QAEEALKGKK KGDGDEKLYK GLHGYTDYKA GFRREQTVSS EKAGGSHGPL  180
RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE RDWDEKEKAR  240
KRKLAMKAED DDEEKDSDAS DEEDDENGLP FACFICREPF TDPVMTRCKH YFCEHCALKH  300
HAKNKKCFVC NQPTNGIFNT AFEIRKRMAA EKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-641932814317RING finger protein 113A
5z58_M1e-641932814317RING finger protein 113A
6ff4_t1e-641932814317RING finger protein 113A
6ff7_t1e-641932814317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.B01852.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843831.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-160C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A022QWE90.0A0A022QWE9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-136C3H family protein