PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00009.1.p
Common NameLOC105973929, MIMGU_mgv1a019226mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 319aa    MW: 35050 Da    PI: 7.5516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20135184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Migut.C00009.1.p 135 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 184
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-34134194No hitNo description
PROSITE profilePS5103223.472135192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33135193IPR001471AP2/ERF domain
SMARTSM003801.3E-38135198IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-23135193IPR016177DNA-binding domain
PRINTSPR003672.8E-11136147IPR001471AP2/ERF domain
PfamPF008472.0E-14136184IPR001471AP2/ERF domain
PRINTSPR003672.8E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAATMDFWGS NVDENSFRGG GELMEALEPF MKSASSTPIS TSSTLPPSLS SNYPPSFSSF  60
PSNNNDQYFS VINYPNSASS SYPYNSYNPS PQFEPTPNYS FGPVQDVQMW GPLQSHNSNF  120
PIPRPVYVPP KPAKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDRAAY  180
KLRGDSARLN FPHLRRAGGE YTPLHASVDA KLQSICRNLA EGKSVDGGAA KKCKKSKKAA  240
STAAAAATTA APTVKEDSKY RQTVEPESDG SGGLSPESEL RFPDFEFRVS GFAEEELPGW  300
EMGSLPKYPS YEIDWAAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20134200470ATERF1
3gcc_A1e-20134200470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854425.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A022Q6G00.0A0A022Q6G0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-41related to AP2 4