PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00592.1.p
Common NameMIMGU_mgv11b0129431mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 154aa    MW: 17124.3 Da    PI: 6.96
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00592.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-1746125489
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ++ps+v+   +l lp +f+++  ++  ++  ++l de+g++W v++  rk++    l++GWk+F  ++gL +gD ++F+l++ + 
  Migut.C00592.1.p  46 SMLPSHVSGGFWLGLPSHFCKKK-LPR-TDGVVSLVDEQGEEWPVNYLARKNG----LSGGWKKFSIDHGLVDGDALIFQLIRPTV 125
                       689*****************776.443.4448***************667776....***********************997433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2537134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-2137134IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-2441132No hitNo description
SMARTSM010192.0E-2143136IPR003340B3 DNA binding domain
PROSITE profilePS5086313.45143134IPR003340B3 DNA binding domain
PfamPF023621.2E-1446123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
DVRITYSTRD LSNRVYASDE ARDWAVKKAE ETESTLGSDY PTLVRSMLPS HVSGGFWLGL  60
PSHFCKKKLP RTDGVVSLVD EQGEEWPVNY LARKNGLSGG WKKFSIDHGL VDGDALIFQL  120
IRPTVLKVFI TRVDGSGKTE TNKTNKVEES IEH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00592.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851527.11e-110PREDICTED: B3 domain-containing protein At5g42700-like, partial
SwissprotQ69V364e-52Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
SwissprotQ9FMZ42e-52Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A022QDS01e-106A0A022QDS0_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.19e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]