PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00610.1.p
Common NameMIMGU_mgv1a013005mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 246aa    MW: 26251.1 Da    PI: 8.7073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.7e-184085147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd++l ++v ++G ++W++I++++  gR++k+c++rw + 
  Migut.C00610.1.p 40 KGPWSAEEDKILTRLVDRYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85
                      79*****************************9.***********985 PP
2Myb_DNA-binding49.21.2e-1594136347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++ Ed  ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ 
  Migut.C00610.1.p  94 PFSAAEDAAILAAHGKYGNR-WATIARLLP-GRTDNAVKNHWNST 136
                       799*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4933590IPR017930Myb domain
SuperFamilySSF466891.19E-3038133IPR009057Homeodomain-like
SMARTSM007179.3E-163988IPR001005SANT/Myb domain
PfamPF002499.6E-184085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-244193IPR009057Homeodomain-like
CDDcd001671.63E-144284No hitNo description
SMARTSM007172.0E-1491139IPR001005SANT/Myb domain
PROSITE profilePS5129420.3392141IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2294140IPR009057Homeodomain-like
PfamPF002491.3E-1294136IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDIFQRCSSG GSSTSSDSSS DSSSMSAGGG KNPTKSERIK GPWSAEEDKI LTRLVDRYGA  60
RNWSLISKYI KGRSGKSCRL RWCNQLSPNV EHRPFSAAED AAILAAHGKY GNRWATIARL  120
LPGRTDNAVK NHWNSTLKRR CQMRRSFEEP PKSDDGENTA AAAAGSGGVY PPPPPASVGG  180
GDCDGDEYDP MTALSLAPPG TGGGGAAAEK GLPAEFWDVM RNVIAREVRD YVTTSYPETS  240
SGFRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40391416108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851522.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A022Q9M31e-117A0A022Q9M3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-56myb domain protein 73