PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00704.1.p
Common NameMIMGU_mgv1a005657mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 480aa    MW: 50745.2 Da    PI: 8.6776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00704.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056789123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Migut.C00704.1.p 67 FVCEICNKGFQRDQNLQLHRRGH 89
                      89*******************88 PP
2zf-C2H213.10.00028143165123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s+ k H++t+
  Migut.C00704.1.p 143 HKCERCSKKYAVHSDWKAHMKTC 165
                       79*******************98 PP
3zf-C2H211.70.00081173191523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr++++ +H   +
  Migut.C00704.1.p 173 DCGTVFSRRDSFITHRAFC 191
                       9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-66689No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121717.6E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355240108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-6138164No hitNo description
SMARTSM0035581143163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787143171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MQKTMVEIDG SPPPSSLSGE NQIKSDQPAA EAAPFPTKKR RNLPGMPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEPRKRVYVC PEPSCVHHEP  120
TRALGDLTGI KKHFCRKHGE KKHKCERCSK KYAVHSDWKA HMKTCGTREY PCDCGTVFSR  180
RDSFITHRAF CDALAQESAR NQTAAPPVSS PPPPPLTPST GVLSPVLSIQ SSEPPENHQI  240
PQLQPPPPPA VTTPSSSSTS SGKAGASVFA GIFSSSTTSE LPQHHQPPPP PPPYSGSLLC  300
PMPPPPFDPM SLSLSSSLYG AHPSLFPPPT HQNTQPPHPS LSATALLQKA AQMGSTSSSN  360
SSFLRGLGLS LPSSSGPHHA TTNVKLESNS LAFGLGLGVG PAISNSGFNE IMFGNKPAAA  420
TTLDFLGLGV GPGDQPSSDG GGFSAFLSSI GGGGGGGTTF VGGGDMWDDS DNDRKPTML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33139200364Zinc finger protein JACKDAW
5b3h_F9e-33139200364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00704.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845838.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-134IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A022S1M00.0A0A022S1M0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]