PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C00785.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15048.9 Da    PI: 9.5906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C00785.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28956148
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                      k+ien++nrqvt+skRrng++KKA+ELSvLCda+v+++++sst+kl++
  Migut.C00785.1.p  9 KKIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIVMISSTQKLHD 56
                      78********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.787161IPR002100Transcription factor, MADS-box
CDDcd002652.36E-36264No hitNo description
PRINTSPR004043.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELSVLCD AKVSIVMISS TQKLHDTSAP  60
PSQDPHYGLV ENEGDYNSVL GFPHGGPRII ALRLPPNHHQ HQHHHHEQQH HQHHHPGLHS  120
GGAGSDLTTF ALLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16155155MEF2C
5f28_B3e-16155155MEF2C
5f28_C3e-16155155MEF2C
5f28_D3e-16155155MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C00785.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5240121e-118AY524012.1 Mimulus guttatus deficiens (DEF) mRNA, DEFA paralog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842816.12e-46PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotP237067e-32DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2G2ZSE85e-48A0A2G2ZSE8_CAPAN; Floral homeotic protein PMADS 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-31MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]