PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.C01016.1.p

Common Name

LOC105950807, MIMGU_mgv1a018390mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Trihelix

Protein Properties

Length: 385aa MW: 44748.1 Da PI: 6.5715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C01016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.3e-24	90	184	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li+a++++ e+ +++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ ++d Migut.C01016.1.p 90 KWTDTMVRLLITAVSYISEEASSEHskrnlsnlQKKGKWKSVSKAMAERGHLVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPELLDV 182 7************999988865335667778******************************************669999999999 PP trihelix 85 le 86 ++ Migut.C01016.1.p 183 MD 184 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-23	88	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEGDLSSPST MRGNPSYGGF DFHLHHNPNR RQPSSIAHHT IHENFPLTIR STQDFDQSIY 60 GKSASEEDEP SVIEERKGKK SSSSPWQRVK WTDTMVRLLI TAVSYISEEA SSEHSKRNLS 120 NLQKKGKWKS VSKAMAERGH LVSPQQCEDK FNDLNKRYKR LNEILGRGTS CEVVENPELL 180 DVMDRISEKN KEEVRKILSS KHLHYEEMCS YHNGNRLHLP HDSDLQRSLK LALLPKDDCD 240 GNEFDDLDGS DENRVVDLDP GRGPGKRVKH SEENLEDFGV KDSLNALDCN KTFDENQAPN 300 EDANTSTLQK QWMSRRNVQL EEKRLHIQVQ TLELEKERFK WQRFCRKQDR ELEMMKMEIE 360 RMKLENERMA LELRRKEMGI IDNN*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEGDLSSPST MRGNPSYGGF DFHLHHNPNR RQPSSIAHHT IHENFPLTIR STQDFDQSIY  60
GKSASEEDEP SVIEERKGKK SSSSPWQRVK WTDTMVRLLI TAVSYISEEA SSEHSKRNLS  120
NLQKKGKWKS VSKAMAERGH LVSPQQCEDK FNDLNKRYKR LNEILGRGTS CEVVENPELL  180
DVMDRISEKN KEEVRKILSS KHLHYEEMCS YHNGNRLHLP HDSDLQRSLK LALLPKDDCD  240
GNEFDDLDGS DENRVVDLDP GRGPGKRVKH SEENLEDFGV KDSLNALDCN KTFDENQAPN  300
EDANTSTLQK QWMSRRNVQL EEKRLHIQVQ TLELEKERFK WQRFCRKQDR ELEMMKMEIE  360
RMKLENERMA LELRRKEMGI IDNN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C01016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012829627.1	0.0	PREDICTED: uncharacterized protein LOC105950807
TrEMBL	A0A022PT85	0.0	A0A022PT85_ERYGU; Uncharacterized protein
STRING	Migut.C01016.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-123	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Migut.C01016.1.p
Entrez Gene	105950807