PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C01064.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29218.4 Da    PI: 7.6897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C01064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtfskRr g++KK +ELSvLCda++ +i+fs++gkl ey++
  Migut.C01064.1.p  9 KRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCT 59
                      79***********************************************96 PP
2K-box62.12.2e-21911741396
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        + ++++ela++k+e+ nLq ++ +++G+dL++  + eL++Le+qLe+s++k+R++K +ll+eq+e+l++ e  l++en+++ +
  Migut.C01064.1.p  91 YNDQMYKELARMKNETLNLQLSLQRYKGDDLSTVHFDELRELEHQLEQSVNKVRARKFQLLHEQLENLKRTEVLLEKENQEMYQ 174
                       56789**************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-31282IPR002100Transcription factor, MADS-box
CDDcd002653.84E-42276No hitNo description
PRINTSPR004041.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-2092175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59492187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIEVKR IENNTSRQVT FSKRRSGLMK KTHELSVLCD AQIGLIVFST KGKLTEYCTP  60
PLCMKQIIDR YVKSKGIPIP DHNNRAGAIA YNDQMYKELA RMKNETLNLQ LSLQRYKGDD  120
LSTVHFDELR ELEHQLEQSV NKVRARKFQL LHEQLENLKR TEVLLEKENQ EMYQWLMSNQ  180
IEKQAEMEAQ QQQIAMTELK LVEQQPLMNQ FPFFGEDLHL GNLPDQQLHT HTYRLQPTHP  240
NLQDSTQIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16162162MEF2C
5f28_B1e-16162162MEF2C
5f28_C1e-16162162MEF2C
5f28_D1e-16162162MEF2C
6byy_A1e-16162162MEF2 CHIMERA
6byy_B1e-16162162MEF2 CHIMERA
6byy_C1e-16162162MEF2 CHIMERA
6byy_D1e-16162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C01064.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.10.0PREDICTED: MADS-box protein defh21
SwissprotQ8RVL41e-136DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A022R1421e-133A0A022R142_ERYGU; Uncharacterized protein (Fragment)
TrEMBLA0A2Z7AN331e-133A0A2Z7AN33_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-60MIKC_MADS family protein