PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.C01285.1.p

Common Name

LOC105974405, MIMGU_mgv1a006425mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

TCP

Protein Properties

Length: 445aa MW: 47885.1 Da PI: 7.6379

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C01285.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.2	3.5e-39	120	224	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ + s++ Migut.C01285.1.p 120 IKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksapl 212 6899***************************************************************99987777777777444444444445 PP TCP 89 ...........k 89 + Migut.C01285.1.p 213 flggatgmlgfH 224 554444444441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-37	124	227	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.954	124	178	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MEFMEPNNKN QGGGGNSSNS DHHHEHHQHH QQHHHHHHNQ SQTEPGSGSG PTPLHGPFMG 60 SISMQQSRNL AHSSSSSIST TTTTTATAAA AVTSTAITIA NSNNSNENSN NDSAAKKPVI 120 KKPSKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLHQ AEPAIIAATG 180 TGTIPANFST LNVSLRSSGT TISAPPSKSA PLFLGGATGM LGFHHQLASN VHYGQDPDDS 240 YMKKRYREDT SGATSPKQGR TGGGGHDQEP GSETKPGSAQ TSNFIPAQAM WAVTPAAANV 300 GNAFWMMPVT GSAGTATVGQ QEWPYKASSM QRIGGFEFPG VGRFNPVQLG SMVLQQQQQQ 360 PVQHHLGLGV TETNMGMLAS INAYNSSNNN NNNNNNNNNN NNSRIDLGMN LEHHHQHHQQ 420 HHQHHQQNQP QQSDSEDENP KDSQ*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MEFMEPNNKN QGGGGNSSNS DHHHEHHQHH QQHHHHHHNQ SQTEPGSGSG PTPLHGPFMG  60
SISMQQSRNL AHSSSSSIST TTTTTATAAA AVTSTAITIA NSNNSNENSN NDSAAKKPVI  120
KKPSKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLHQ AEPAIIAATG  180
TGTIPANFST LNVSLRSSGT TISAPPSKSA PLFLGGATGM LGFHHQLASN VHYGQDPDDS  240
YMKKRYREDT SGATSPKQGR TGGGGHDQEP GSETKPGSAQ TSNFIPAQAM WAVTPAAANV  300
GNAFWMMPVT GSAGTATVGQ QEWPYKASSM QRIGGFEFPG VGRFNPVQLG SMVLQQQQQQ  360
PVQHHLGLGV TETNMGMLAS INAYNSSNNN NNNNNNNNNN NNSRIDLGMN LEHHHQHHQQ  420
HHQHHQQNQP QQSDSEDENP KDSQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C01285.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854957.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	1e-71	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A022Q8E5	0.0	A0A022Q8E5_ERYGU; Uncharacterized protein
STRING	Migut.C01285.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	9e-66	TCP family protein

Link Out ? help Back to Top
Phytozome	Migut.C01285.1.p
Entrez Gene	105974405