PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C01339.1.p
Common NameMIMGU_mgv1a025348mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25021.2 Da    PI: 8.9255
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C01339.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.88e-251058250
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      rien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  Migut.C01339.1.p 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                      8*********************************************965 PP
2K-box547.4e-19881761299
             K-box  12 akaeslqqelakLkkeienLqreqRhllG.edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + + + ++e++ Lk eie Lq+ +R + G  + ++++  eL+ Le+ Le  + ++Rs K++++ ++i+ l+ ke+ lqe+nk L++k++
  Migut.C01339.1.p  88 QINTEAKEEISMLKHEIEILQKGLRYIAGgGSADPMTSVELNVLEKYLEIWIYHVRSAKMDIMAQEIQLLKYKEEILQEANKHLQEKID 176
                       4556789*******************98725799*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.829161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-27174IPR002100Transcription factor, MADS-box
CDDcd002651.57E-39274No hitNo description
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1988175IPR002487Transcription factor, K-box
PROSITE profilePS5129711.5490181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MARGKIQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GSMPSLIEKY MKYNREIPAA AQHPKGKQIN TEAKEEISML KHEIEILQKG LRYIAGGGSA  120
DPMTSVELNV LEKYLEIWIY HVRSAKMDIM AQEIQLLKYK EEILQEANKH LQEKIDAQYG  180
MVELGPMLTN FDQYPLITTN NINHQYPLTI PNEIFQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18174173MEF2C
5f28_B9e-18174173MEF2C
5f28_C9e-18174173MEF2C
5f28_D9e-18174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C01339.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095942.11e-114agamous-like MADS-box protein AGL12 isoform X1
SwissprotA2YQK93e-74MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-74MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A022Q4361e-160A0A022Q436_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98102024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-70AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]