PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00108.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 131aa    MW: 14373.7 Da    PI: 10.6763
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35.1e-192458135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      Cs C ttkTplWR gp+g+k+LCnaCG++y kk++
  Migut.D00108.1.p 24 CSDCSTTKTPLWRGGPSGPKSLCNACGIKYNKKRR 58
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4261853IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-131876IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-132058No hitNo description
CDDcd002022.93E-122359No hitNo description
Gene3DG3DSA:3.30.50.106.9E-162358IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.0E-162458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDLKEDKKSD SEGKNNSSPS LKSCSDCSTT KTPLWRGGPS GPKSLCNACG IKYNKKRRQL  60
LGLDTGRTNK KKKRTSVTRS NEVSEILKMR FMALGNDVVL RRSGKLMSKL REEERAAILL  120
MALSCGSVYA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15573KRRQLLGLDTGRTNKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00108.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837472.13e-89PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG103e-30GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2G9G6U22e-76A0A2G9G6U2_9LAMI; Uncharacterized protein
STRINGMigut.D00108.1.p1e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-29GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]