PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00164.1.p
Common NameLOC105954291, MIMGU_mgv1a008599mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 369aa    MW: 40275.4 Da    PI: 8.4895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00164.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.5e-093763127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +f+rtG C y ++C+++H++
  Migut.D00164.1.p 37 PGQPDCAYFMRTGSCGYAAKCRYNHPR 63
                      5789*********************96 PP
2zf-CCCH42.11.4e-1380104327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C++++rtGtCk+G++CkF+H++
  Migut.D00164.1.p  80 EPICQYYLRTGTCKFGASCKFNHPK 104
                       799********************96 PP
3zf-CCCH33.85.6e-11126150327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tG+Ck+G +CkF+H++
  Migut.D00164.1.p 126 EKECSYYLKTGQCKFGMTCKFNHPQ 150
                       689********************97 PP
4zf-CCCH40.54.7e-13282307227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C++++rtG CkyG +C+++H+p
  Migut.D00164.1.p 282 GQPDCKYYMRTGDCKYGLSCRYNHPP 307
                       6799********************97 PP
5zf-CCCH27.94.1e-09327351226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +   C+f+++ G+Ck+G  CkF H+
  Migut.D00164.1.p 327 GVQACSFYLQKGHCKFGRACKFDHP 351
                       5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3853664IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-53663IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-63863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-54065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-44263IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-777104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.79877105IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1180104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-680105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-682103IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6124152IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8126150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4129150IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-7280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45280308IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5285308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5286306IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464325353IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-7327351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.34E-5327352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELYGDQQQV EWAQESGLEE SMRRLNLWER EVYPERPGQP DCAYFMRTGS CGYAAKCRYN  60
HPRDRTSSLV GGEYPERVGE PICQYYLRTG TCKFGASCKF NHPKNAGGSL TNAPLNIYGY  120
PLRTGEKECS YYLKTGQCKF GMTCKFNHPQ PDGTSAVSAS ARPFYPTMQS LSSPSPDKYD  180
TSASTFRVAR PPPLLPSSYV AGAYGPMLLP GVVPIPNWNP YSGAVSPAPS PGPQTSVGGA  240
ASGYGLSQIG PSGAPAYGGT YSQLPSSSLS VTKEHKLPER SGQPDCKYYM RTGDCKYGLS  300
CRYNHPPDWL VLNNCALSPL GFPLRPGVQA CSFYLQKGHC KFGRACKFDH PIKYSPDSLY  360
TEMPGPNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00164.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833419.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-142C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A022S4370.0A0A022S437_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-136C3H family protein