PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00185.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 543aa MW: 58725.5 Da PI: 8.6249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00185.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Migut.D00185.1.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	15.5	5e-05	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Migut.D00185.1.p 162 WKCDKCSKKYAVQSDWKAHQKTC 184 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	85	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.34E-8	85	108	No hit	No description
PROSITE profile	PS50157	10.949	86	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	127	157	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.3E-5	150	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.34E-8	157	183	No hit	No description
SMART	SM00355	94	162	182	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MSNITGDDEG SFSSGEVQQQ QQEKHSLPST TSNGSSTSHH RKQPPPSPPA ASASAAKKKR 60 NLPGNPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSTT 120 EVRKRVYICP EPTCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH 180 QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENSKV NHHGIISGQS QLPDLIMPNI 240 PLSTNANMGL PEFNNNNNPL KSLPQELIPT PFKPMNMFST ASGALFGTPL SSSGLHLSSN 300 AASPGYNPGP ASGSAHMSAT ALLQKAAQMG ASATNSMNSP MIQKTFVTTM AGPDQGPGPV 360 SRPTYDNNFH HHHHGGQHEQ APPPFNGGGG FAGQLLFEGG GSAMSDMMMY GGMLMGGGNG 420 DQNSPAAGIF LKNAVEVQEG SDQSCGILQG RNNGGNNGMM MGARNLARFG GGNDMTTVDF 480 MGVGGSNNMH DQRLEMDHNH QHQIMQLMHN NPFHNQQQQQ QQQQLSQGDS DHGGEKPLYN 540 TF*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MSNITGDDEG SFSSGEVQQQ QQEKHSLPST TSNGSSTSHH RKQPPPSPPA ASASAAKKKR  60
NLPGNPDPTA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSTT  120
EVRKRVYICP EPTCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH  180
QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENSKV NHHGIISGQS QLPDLIMPNI  240
PLSTNANMGL PEFNNNNNPL KSLPQELIPT PFKPMNMFST ASGALFGTPL SSSGLHLSSN  300
AASPGYNPGP ASGSAHMSAT ALLQKAAQMG ASATNSMNSP MIQKTFVTTM AGPDQGPGPV  360
SRPTYDNNFH HHHHGGQHEQ APPPFNGGGG FAGQLLFEGG GSAMSDMMMY GGMLMGGGNG  420
DQNSPAAGIF LKNAVEVQEG SDQSCGILQG RNNGGNNGMM MGARNLARFG GGNDMTTVDF  480
MGVGGSNNMH DQRLEMDHNH QHQIMQLMHN NPFHNQQQQQ QQQQLSQGDS DHGGEKPLYN  540
TF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	158	221	3	66	Zinc finger protein JACKDAW
5b3h_F	6e-35	158	221	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00185.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833280.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-111	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A022S374	0.0	A0A022S374_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-99	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Migut.D00185.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]