PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00564.1.p
Common NameLOC105951054, MIMGU_mgv1a020761mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 166aa    MW: 18317.6 Da    PI: 7.573
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00564.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601475.4e-46141131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca+dC +apyfpae+p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ae
  Migut.D00564.1.p  14 PCAACKLLRRRCAEDCLFAPYFPAEEPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQAE 106
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       lal+++e
  Migut.D00564.1.p 107 LALAQAE 113
                       ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.48413114IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4514111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKDSGRKQGG AASPCAACKL LRRRCAEDCL FAPYFPAEEP HKFASVHKVF GASNVNKMLQ  60
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQAELALA QAEVVHLRMR  120
QLSSNADNPS PSTKGRRSHH HQPKSLFNMD MSTEHDNNMD DPFWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-50101247121LOB family transfactor Ramosa2.1
5ly0_B8e-50101247121LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00564.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829903.11e-122PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE93e-66LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A022S1U01e-121A0A022S1U0_ERYGU; Uncharacterized protein
STRINGMigut.D00564.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-62LOB domain-containing protein 4