PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00604.1.p
Common NameLOC105949525, MIMGU_mgv1a021648mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YA
Protein Properties Length: 268aa    MW: 29369.2 Da    PI: 7.5629
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00604.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.91.2e-31160216158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RR++Rak+e ekkl +k+rkpylheSRh+hAlrR+R++gGrF
  Migut.D00604.1.p 160 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKARKPYLHESRHQHALRRARSTGGRF 216
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-35158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.431159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-27161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQSKTSKSAN QEESDLYNVA NSTAYSDSWW NNNTGYNSFS ASAMRGNASD SSESQSEGGV  60
NEEDDDTAKR SPSSAHLQHD RIYRQEEQNL GQVPPTLHPR DDGSLTRAPH LELVGHSAAF  120
GTYPYDPSYG VVMAAGQHLV PPHVYDMHHS RMQLPLDMAQ EPVYVNAKQY HGILRRRESR  180
AKAELEKKLI KARKPYLHES RHQHALRRAR STGGRFAKKP DGDTSKVTGG GMVGSSQSIT  240
SSRSEPLLSE SGGQVQNDLH VGKGDGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18160231273NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00604.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828315.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_012828390.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_012828465.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A022S4J20.0A0A022S4J2_ERYGU; Uncharacterized protein
STRINGMigut.D00604.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-39nuclear factor Y, subunit A1