PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00653.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HB-other

Protein Properties

Length: 419aa MW: 47467.4 Da PI: 7.755

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00653.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.5	3e-15	28	82	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 kR t q+++L++++++++yp ++ ++LA+++gL+e+qV+ WF+ +R k+k Migut.D00653.1.p 28 TKRSVKTYAQVQVLKKFYNEHKYPPESIQTQLAESIGLSEKQVSEWFCHQRLKDK 82 589999***********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-15	8	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.333	24	84	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-14	26	89	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-13	26	88	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-13	29	82	IPR001356	Homeobox domain
CDD	cd00086	6.34E-13	29	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MNEVPNDEQS HEMHSEDDKA LLDENNNTKR SVKTYAQVQV LKKFYNEHKY PPESIQTQLA 60 ESIGLSEKQV SEWFCHQRLK DKSLMTNADN YVIRKHDLSS GPRQDSCGSI KKQGHDAYSG 120 SSSSLRDMSN HRTGGDPTLD MATSNYFTPK YPLMDVKTRP GRSGYLKVKG QHEMSAVTVV 180 MKQMGKHYRE DGPPLSVEFD LLPPGAFESP RATCYAEEDV LATSPDYPKI HQHPNFGKGC 240 GYNSRMASQS SNTDGTRSTK PQGSDIPNSY IHQAFKQNNS LPNNGAYGAR MNSFLPLDEV 300 SATENIFGGE NRDNYGMRYR YGVEGKRMAS MQPFGEILNR EKESTFRKYN DVGGNISKGE 360 NIENLTVKDF KIHNSFDQVH HRQTNAKDGR TYAERWTEIT NENQVHKRTR NEFPQSYT*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MNEVPNDEQS HEMHSEDDKA LLDENNNTKR SVKTYAQVQV LKKFYNEHKY PPESIQTQLA  60
ESIGLSEKQV SEWFCHQRLK DKSLMTNADN YVIRKHDLSS GPRQDSCGSI KKQGHDAYSG  120
SSSSLRDMSN HRTGGDPTLD MATSNYFTPK YPLMDVKTRP GRSGYLKVKG QHEMSAVTVV  180
MKQMGKHYRE DGPPLSVEFD LLPPGAFESP RATCYAEEDV LATSPDYPKI HQHPNFGKGC  240
GYNSRMASQS SNTDGTRSTK PQGSDIPNSY IHQAFKQNNS LPNNGAYGAR MNSFLPLDEV  300
SATENIFGGE NRDNYGMRYR YGVEGKRMAS MQPFGEILNR EKESTFRKYN DVGGNISKGE  360
NIENLTVKDF KIHNSFDQVH HRQTNAKDGR TYAERWTEIT NENQVHKRTR NEFPQSYT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00653.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856682.1	0.0	PREDICTED: uncharacterized protein LOC105975936
TrEMBL	A0A022S4D5	1e-178	A0A022S4D5_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	7e-42	HB-other family protein

Link Out ? help Back to Top
Phytozome	Migut.D00653.1.p