PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00705.1.p

Common Name

LOC105971109, MIMGU_mgv1a011181mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 291aa MW: 32484.1 Da PI: 5.747

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00705.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57	4.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arik+i++ade+v +i+ +P l+ska elf+ +l +++ + e +tl+ ++++v r fdfl +v + Migut.D00705.1.p 6 DTRFPAARIKRIMQADEEVGKIAMAVPLLMSKALELFLQDLCGQTYEVTLERGAKTLNSLHLKQCVRRCGAFDFLKHVVSK 86 5789***********************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.5E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.37E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	3.8E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRKKLDTRFP AARIKRIMQA DEEVGKIAMA VPLLMSKALE LFLQDLCGQT YEVTLERGAK 60 TLNSLHLKQC VRRCGAFDFL KHVVSKVPDL GGSDAATEDK SATKRRKISE DEDGNCDESK 120 RIRIQETHST TTNRRGRGGR TGRGRGVGRG RGRGRGRGSR TPEGESVIHH EKYEEDVDSP 180 HRNDENQKEA VAAGDADSRT VSGSEEDKPV RDFDLNVDLN ENGCPTLTLA DARSELPKKK 240 KKPVATEVKH EDIPGWSMDD MKRMGIDPVQ FANSNGWMDE EDEDYDEEEE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	157	RGRGRGRGRG
2	236	242	PKKKKKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00705.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851439.1	0.0	PREDICTED: dr1-associated corepressor isoform X1
TrEMBL	A0A022S2K6	0.0	A0A022S2K6_ERYGU; Uncharacterized protein
STRING	Migut.D00705.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-55	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Migut.D00705.1.p
Entrez Gene	105971109