PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00812.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 254aa    MW: 28236.2 Da    PI: 4.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00812.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20113163155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr+++ +grW+AeIrdp     +  kr++lg+++t+eeAa  +++a+ +l+g
  Migut.D00812.1.p 113 KKFRGVRQRP-WGRWAAEIRDP-----SlgKRVWLGTYDTPEEAASVYDRAAVELKG 163
                       59********.**********9.....445***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.6E-679253IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.69E-30113172No hitNo description
SMARTSM003801.3E-36114177IPR001471AP2/ERF domain
PROSITE profilePS5103223.367114171IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-21114172IPR016177DNA-binding domain
PfamPF008471.2E-12114163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-29114172IPR001471AP2/ERF domain
PRINTSPR003678.3E-10115126IPR001471AP2/ERF domain
PRINTSPR003678.3E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEEELQPPFF AVKFTEHVVT TNKYYCINHH RRSTNLRRRI VRIVLNDADA TDSDSDGDDE  60
SNAGGFARRV VRRHVEEIKF EGSPATAAAA QVTKKDAKRG RDPPVSDELS SRKKFRGVRQ  120
RPWGRWAAEI RDPSLGKRVW LGTYDTPEEA ASVYDRAAVE LKGSAAVVNF PAVVVTTEST  180
TTESESVSSA NDAALSPTSV LRYEEMTPFD GIGVDFGFDV DWPLSLPDVG MSGNFFAEEF  240
GEFDFDDFIN DLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21113178470ATERF1
3gcc_A7e-21113178470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00812.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836658.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-64PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A022S4081e-150A0A022S408_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-31cytokinin response factor 4