PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01107.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 131aa    MW: 14890 Da    PI: 6.3495
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.61.2e-3481081101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC ++Cvla+yfpae++ +f+nv +lFG++n lk+lk+++eee +++++sl++eAe+r++ Pv+G ++v +kl+ ++e++++e
  Migut.D01107.1.p   8 ACAACKHQRRKCDQNCVLAKYFPAEKSDDFENVYHLFGMQNTLKILKSVEEEEGDATIESLIMEAEMRLEHPVHGHFSVTRKLSIEIEKTETE 100
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+ +++++
  Migut.D01107.1.p 101 LEFVRKQI 108
                       ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.240.106.4E-4522IPR001138Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profilePS5089122.4047108IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-328105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MANVAQKACA ACKHQRRKCD QNCVLAKYFP AEKSDDFENV YHLFGMQNTL KILKSVEEEE  60
GDATIESLIM EAEMRLEHPV HGHFSVTRKL SIEIEKTETE LEFVRKQIQL CKGVDNRPGP  120
STREGRPDQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1851088111LOB family transfactor Ramosa2.1
5ly0_B1e-1851088111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01107.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852620.15e-94PREDICTED: LOB domain-containing protein 7-like
TrEMBLA0A022RYR67e-77A0A022RYR6_ERYGU; Uncharacterized protein
STRINGMigut.D01107.1.p2e-93(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.16e-31LOB domain-containing protein 7