PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D01179.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LFY

Protein Properties

Length: 235aa MW: 26240.3 Da PI: 8.7531

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01179.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	404.6	1.1e-123	12	216	189	386
FLO_LFY 189 skkkqkrkkkkelkse........ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiaker 273 +k++ +r+++++++ +d+de ee+d+++ g+g +g+erqrehPfivtepgevargkknGLDYLf LyeqCrefL+qvqkiaker Migut.D01179.1.p 12 RKNNYRRRSSSSSS-GnmvwmddvDDDDEGEEDDDQNGGGGGGGNERQREHPFIVTEPGEVARGKKNGLDYLFYLYEQCREFLIQVQKIAKER 103 23333333333322.136677664444444455555556777889********************************************** PP FLO_LFY 274 GekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLs 366 GekcPtkvtnqvfryak aga+yinkPkmrhYvhCYalhcLde as alrr+fker+envGawrqacy+p+v +aa gwdidavfn+hprLs Migut.D01179.1.p 104 GEKCPTKVTNQVFRYAKAAGANYINKPKMRHYVHCYALHCLDEAASIALRRSFKERRENVGAWRQACYNPVVVVAAAYGWDIDAVFNSHPRLS 196 ***************************************************************************************** PP FLO_LFY 367 iWYvPtkLrqLChlerskas 386 iWYvPtkLrqLCh+ers+a+ Migut.D01179.1.p 197 IWYVPTKLRQLCHVERSNAA 216 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	1.7E-116	14	216	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSSTGGKKLR LRKNNYRRRS SSSSSGNMVW MDDVDDDDEG EEDDDQNGGG GGGGNERQRE 60 HPFIVTEPGE VARGKKNGLD YLFYLYEQCR EFLIQVQKIA KERGEKCPTK VTNQVFRYAK 120 AAGANYINKP KMRHYVHCYA LHCLDEAASI ALRRSFKERR ENVGAWRQAC YNPVVVVAAA 180 YGWDIDAVFN SHPRLSIWYV PTKLRQLCHV ERSNAAAAAA SSSVTGGGPD HLSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2vy1_A	1e-105	54	234	2	194	PROTEIN LEAFY
2vy2_A	1e-105	54	234	2	194	PROTEIN LEAFY
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the specification of floral meristem identity.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01179.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY524042	0.0	AY524042.1 Mimulus guttatus floricaula (FLO) mRNA, FLOB paralog, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852657.1	1e-177	PREDICTED: floricaula protein
Swissprot	O22621	1e-109	ALF_PETHY; Protein ALF
TrEMBL	A0A022Q794	1e-156	A0A022Q794_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.D01179.1.p	1e-177	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6668	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61850.1	1e-99	floral meristem identity control protein LEAFY (LFY)

Link Out ? help Back to Top
Phytozome	Migut.D01179.1.p

Publications ? help Back to Top
Souer E, et al. Genetic control of branching pattern and floral identity during Petunia inflorescence development. Development, 1998. 125(4): p. 733-42 [PMID:9435293]