PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01224.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 260aa    MW: 29376.2 Da    PI: 10.1195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09138184555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Migut.D01224.1.p 138 HSLAERVRRERISERMKLLQSLVPAC----HKVTGKALMLDEIIHYVQSLQ 184
                       999**********************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.24E-10131188No hitNo description
SuperFamilySSF474592.62E-16131199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.945133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15134197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-10139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAFSSSTSS SPIFLPNNPT IMNNNMFALL DYIQPNNALS SFGNNNNNNN NNNNNNNQAS  60
SLVTDYYYNK HTPNPIPMNK NRKSSPKQTS SPNSAHSKKQ KKKRENNGEE KKKKNQEEEE  120
KKGYIHVRAR RGQATDRHSL AERVRRERIS ERMKLLQSLV PACHKVTGKA LMLDEIIHYV  180
QSLQNQVEFL SMKLASVNPL FYDFGMDLES SFMVGHIQQN LTPLPSMKEC IMDNSVNSLL  240
LQQPQINPLN NAVPQVIST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01224.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852587.10.0PREDICTED: transcription factor bHLH75-like
SwissprotQ93W881e-48BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A022QDC51e-119A0A022QDC5_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.D01224.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]