PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01274.1.p
Common NameLOC105951648, MIMGU_mgv1a014253mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22776.1 Da    PI: 10.1418
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01274.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.3e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien +nrqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gk y +ss
  Migut.D01274.1.p  9 KRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVALLVFSPSGKAYQFSS 59
                      79***********************************************96 PP
2K-box75.71.2e-258317211100
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        + +e +++e++ L + +e+L+   +h+ Ge+L+ L +keL+q+e+qL  ++++iR+kK ++++e+i++l+kk k+lqeen++L+kkl e
  Migut.D01274.1.p  83 ITSMEVWRNEIEELSRTVETLEAREKHFAGENLSGLGMKELKQIERQLRVGVERIRAKKRRIVVEHINYLKKKHKDLQEENNNLQKKLHE 172
                       567899****************999**************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.74E-39270No hitNo description
SuperFamilySSF554552.88E-32274IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2284170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.56386176IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.1705.9E-4132178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSVLCD AEVALLVFSP SGKAYQFSSH  60
DINRIITRYK IEAGITKSDE QGITSMEVWR NEIEELSRTV ETLEAREKHF AGENLSGLGM  120
KELKQIERQL RVGVERIRAK KRRIVVEHIN YLKKKHKDLQ EENNNLQKKL HELQEGNTST  180
IILESDSTCR LFQRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22169169MEF2 CHIMERA
6byy_B2e-22169169MEF2 CHIMERA
6byy_C2e-22169169MEF2 CHIMERA
6byy_D2e-22169169MEF2 CHIMERA
6bz1_A2e-22169169MEF2 CHIMERA
6bz1_B2e-22169169MEF2 CHIMERA
6bz1_C2e-22169169MEF2 CHIMERA
6bz1_D2e-22169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01274.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830552.11e-141PREDICTED: MADS-box transcription factor 14-like isoform X1
TrEMBLA0A022RSS81e-140A0A022RSS8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-48AGAMOUS-like 8