PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01311.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22870.9 Da    PI: 8.1677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01311.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-212674149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtfskRr+g++ KA+E+SvLC+ae+a+++ s+ +k+y y
  Migut.D01311.1.p 26 KKIEKKSSLQVTFSKRRTGLFRKASEISVLCGAEIAILVQSPANKIYSY 74
                      68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.46E-271888IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-321877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.311878IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-202040IPR002100Transcription factor, MADS-box
PfamPF003191.9E-222774IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-204055IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-205576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MENINNNKEL TICKKKTMGR RKIEIKKIEK KSSLQVTFSK RRTGLFRKAS EISVLCGAEI  60
AILVQSPANK IYSYGHPSVE TLLHRYQTGG AGGSSSAGLS IIPYSEDGRN KYDEAVKKLE  120
IVKRSMKQES SGISSTRFWW DEPMEGMELY ELEEYVEAME ALKDNVSRRV EEMEKQKSNA  180
ASASTSDLDP SFQINYQDFD GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-151886169MEF2C
5f28_B5e-151886169MEF2C
5f28_C5e-151886169MEF2C
5f28_D5e-151886169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01311.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833853.11e-146PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022RJL01e-133A0A022RJL0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.18e-23AGAMOUS-like 23