PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01312.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26357.8 Da    PI: 5.5142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72.1e-202371149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtfskRr g++ KA+ELSvLC+ae+a+++ s+ +k++ y
  Migut.D01312.1.p 23 KKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIFSY 71
                      68*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-311574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.9041575IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-251585IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-191737IPR002100Transcription factor, MADS-box
PfamPF003195.2E-222471IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-193752IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-195273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENNKELTIC KKKTMGRRKI EIKKIEKKSS LQVTFSKRRI GLFRKASELS VLCGAEIAIL  60
VQSPANKIFS YGHPSVETLI HRHQTGGGGG GSSAASSIIP YKEDGRSKYD EAVKKLEIVK  120
RSMKQESSSS SNTRFWWDEP LDGMELYELE EYAEAMEALK DNVSRRVEEM EKQKSNAASA  180
STSDLDRSFQ INYQDFDGCK SELEEMLIKA EAGVLDIDEL FNFTQDPTIF FDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-151599185MEF2C
5f28_B6e-151599185MEF2C
5f28_C6e-151599185MEF2C
5f28_D6e-151599185MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01312.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833839.11e-172PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022RN471e-160A0A022RN47_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-23AGAMOUS-like 62