PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01313.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19933.7 Da    PI: 8.4432
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01313.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.3e-22957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtfskRr+g++ KA+ELSvLC+ae+a+++ s+ +k+y y
  Migut.D01313.1.p  9 KKIEKKSSLQVTFSKRRTGLFRKASELSVLCGAEIAILVQSPANKIYSY 57
                      68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.59161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-27171IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRRKIEIKK IEKKSSLQVT FSKRRTGLFR KASELSVLCG AEIAILVQSP ANKIYSYGHP  60
SVETLLHRYQ TGGGGGASSS IIPYSEDGRS KYDEAVKKLE IVKRSMKQES NTRFWWDEPM  120
DGMELYELEE YVEAMEALKD NVSRRVEEIE KQKSNAASAS TSDLDPRFLG FCICVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-15169169Myocyte-specific enhancer factor 2B
1tqe_R2e-15169169Myocyte-specific enhancer factor 2B
1tqe_S2e-15169169Myocyte-specific enhancer factor 2B
5f28_A1e-15169169MEF2C
5f28_B1e-15169169MEF2C
5f28_C1e-15169169MEF2C
5f28_D1e-15169169MEF2C
6c9l_A2e-15169169Myocyte-specific enhancer factor 2B
6c9l_B2e-15169169Myocyte-specific enhancer factor 2B
6c9l_C2e-15169169Myocyte-specific enhancer factor 2B
6c9l_D2e-15169169Myocyte-specific enhancer factor 2B
6c9l_E2e-15169169Myocyte-specific enhancer factor 2B
6c9l_F2e-15169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01313.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833836.11e-119PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022RK641e-117A0A022RK64_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61