PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01587.1.p
Common NameLOC105953550, MIMGU_mgv1a015382mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 160aa    MW: 17823 Da    PI: 4.3755
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01587.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.48.6e-241199391
             NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                      ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se++d c+re+++ti+++ +l al  lGf +y+e++ +  +++r
  Migut.D01587.1.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHR 99
                      6899***************************************************************************9987666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-399139IPR009072Histone-fold
SuperFamilySSF471139.56E-3512139IPR009072Histone-fold
PfamPF008082.9E-201479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEPMDIVGRT KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESND  60
VCNREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHRL ETMDTMRSGK WSNGAEMTEE  120
EALAEQQRMF AEARARMNGG GASAPKQSDP ESQHPSSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-351213412133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01587.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832678.11e-116PREDICTED: protein Dr1 homolog
SwissprotP495923e-91NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A022RMH61e-115A0A022RMH6_ERYGU; Uncharacterized protein
STRINGMigut.D01587.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-95nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]