PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01640.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 186aa    MW: 21350.2 Da    PI: 7.3474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1120576099
                      EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +++GW +Fv+++gL  gDfvvF+++g  +f+++v+vf++
  Migut.D01640.1.p 20 SFENGWPQFVRDHGLSIGDFVVFEHTG--NFHFNVSVFDH 57
                      5789********************766..7777****997 PP
2B3452e-1482166186
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+ +++ps +++++r+ +p +fa+++++  ++   +tl+d++ r W  +l   + ++ r v+ kGW  F  +n+Lk gD++ F+l+ 
  Migut.D01640.1.p  82 FVLTMKPSFAHEKARVNIPAEFARSNNLCDKS--SVTLRDPRKRPWPEELGLqKIGPFRLVMWKGWHAFYVSNQLKNGDICRFELNP 166
                       778999999*****************777555..5************999664777777*************************873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.391158IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-131665IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-82057IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-122071IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-92156No hitNo description
Gene3DG3DSA:2.40.330.101.2E-2175183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-2076183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-1480182No hitNo description
PfamPF023623.7E-1282167IPR003340B3 DNA binding domain
SMARTSM010190.003882184IPR003340B3 DNA binding domain
PROSITE profilePS5086312.33782184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEGEIISRHF FNVIAPGLIS FENGWPQFVR DHGLSIGDFV VFEHTGNFHF NVSVFDHTAC  60
EKEFPFEPKN ERHENNTRNP HFVLTMKPSF AHEKARVNIP AEFARSNNLC DKSSVTLRDP  120
RKRPWPEELG LQKIGPFRLV MWKGWHAFYV SNQLKNGDIC RFELNPDSLQ SATALMDVHI  180
SRASV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853809.11e-128PREDICTED: B3 domain-containing protein REM8-like
TrEMBLA0A022Q8Q31e-123A0A022Q8Q3_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-15B3 family protein