PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01642.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 235aa    MW: 26789.8 Da    PI: 9.4063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01642.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-161199299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                      f+v+     ++++ l lp   +++ ++k  +sk  +l++ s  +W++ +  r++ g + +++GW +Fv+++ L  gDfvvF+++g  +f+++v+v
  Migut.D01642.1.p 11 FTVM--VPGFQTH-LNLPSAVCKKLKEK--KSKRAILKS-SIGKWKIDV-CRNNEGLICFENGWPQFVNDHCLSIGDFVVFEHTG--DFNFNVSV 96
                      5555..4456666.99******988766..666788777.5568*****.35555559************************655..8888**** PP

                      E-S CS
                B3 97 frk 99
                      f++
  Migut.D01642.1.p 97 FDH 99
                      *97 PP
2B352.11.2e-16131216186
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                       f+ +++ps + ++ r+ +p+ f++++++  ++    tl+d++ r W vkl    ++++r+++ +GW +F  +n+Lk+gD++ F+l+ g
  Migut.D01642.1.p 131 FVLTMKPSFARRQPRVNIPRVFVRSNSLGDKS--SATLRDPHKRAWPVKLVLeANGRSRVLMCRGWHDFYVSNELKDGDICRFELNlG 216
                       67788899999999************555445..599*************8867777779999*********************8744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.1527100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100175.08E-10998No hitNo description
SuperFamilySSF1019365.1E-189106IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-1610100IPR003340B3 DNA binding domain
PfamPF023623.3E-131099IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-22125214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-23125231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-18129213No hitNo description
PROSITE profilePS5086313.775131233IPR003340B3 DNA binding domain
SMARTSM010194.4E-12131233IPR003340B3 DNA binding domain
PfamPF023621.1E-14131217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGEIISTHF FTVMVPGFQT HLNLPSAVCK KLKEKKSKRA ILKSSIGKWK IDVCRNNEGL  60
ICFENGWPQF VNDHCLSIGD FVVFEHTGDF NFNVSVFDHT ACEKELSIES KKERRENNKG  120
ELDHNSQTPH FVLTMKPSFA RRQPRVNIPR VFVRSNSLGD KSSATLRDPH KRAWPVKLVL  180
EANGRSRVLM CRGWHDFYVS NELKDGDICR FELNLGSLQT KNAVMDVQIS RALV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01642.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853809.11e-115PREDICTED: B3 domain-containing protein REM8-like
TrEMBLA0A022Q6M21e-163A0A022Q6M2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-22B3 family protein