PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01820.1.p
Common NameLOC105972614, MIMGU_mgv1a009382mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 345aa    MW: 38713.9 Da    PI: 5.994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv +++q+G+ +W+++++  g+ R+ k+c++rw +yl
  Migut.D01820.1.p 14 KGPWTPEEDIILVSYIQQHGPSNWRAVPSNTGLFRCSKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding49.11.4e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Migut.D01820.1.p  67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.358961IPR017930Myb domain
SuperFamilySSF466895.5E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-141363IPR001005SANT/Myb domain
PfamPF002493.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231568IPR009057Homeodomain-like
CDDcd001671.60E-101661No hitNo description
PROSITE profilePS5129423.87162116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002493.6E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2469116IPR009057Homeodomain-like
CDDcd001675.20E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ QHGPSNWRAV PSNTGLFRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKIN  120
RQNSENGSSS ETEPKTVSKG QWERRLQTDI HMAKQALCDA LSLDKSDDDE IMITSKLFPM  180
GDPQITNPPP IQTSTYASSA ENIARLLENW TKKSPKKSIS TQSSNSSFNN NNNNNPNSSS  240
GRTSSPSEGA ISTTTFVGFN YSEEDQEAKF DDAGVFHQEE SNNNNNNTNT INNNINVINR  300
GDLDNQIMPF SLLEKWLFDD AAATQGQDGY FMEMAAMGET SDLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853037.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-137MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A022QCZ00.0A0A022QCZ0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-104myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]