PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01992.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 244aa    MW: 28385.7 Da    PI: 5.0553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01992.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l d+++++G g+W+ +++  g+ R++k+c++rw +yl
  Migut.D01992.1.p 14 KGLWSPEEDDKLCDYITRFGVGSWSYVPKLAGLERCGKSCRLRWINYL 61
                      678*******************************************97 PP
2Myb_DNA-binding47.83.2e-1567110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Migut.D01992.1.p  67 RGKFSQQEEDLILTLHQSLGNR-WAQIAAQLP-GRTDNEIKNFWHS 110
                       89********************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23764IPR009057Homeodomain-like
PROSITE profilePS5129416.298961IPR017930Myb domain
SuperFamilySSF466892.32E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-101363IPR001005SANT/Myb domain
PfamPF002493.7E-131461IPR001005SANT/Myb domain
CDDcd001671.58E-71761No hitNo description
PROSITE profilePS5129424.71462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565116IPR009057Homeodomain-like
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1467110IPR001005SANT/Myb domain
CDDcd001674.18E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRHSYCVKQ KLKKGLWSPE EDDKLCDYIT RFGVGSWSYV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGKF SQQEEDLILT LHQSLGNRWA QIAAQLPGRT DNEIKNFWHS SLKKKLPETH  120
ENITQTRTEV INMEDKVLYD PLFLSELQCD PDFSQQNLTR PNYLDNRKTE YSDSSVGNTP  180
STFSWDDEIK NKYESMFDFR IEETNTQTVW EEGNQQIGDF GNYPLALLSE ELSAANFDAF  240
QQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01992.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829321.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH69e-66MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A022PTZ63e-91A0A022PTZ6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-68myb domain protein 86