PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02049.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 217aa    MW: 25514.4 Da    PI: 8.5208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-17449147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l ++v+++G+++W++Ia  ++  R++k+c++rw++ 
  Migut.D02049.1.p  4 RGHWRPAEDEKLRELVERYGPHNWNSIALNLP-SRSGKSCRLRWFNQ 49
                      899*****************************.***********996 PP
2Myb_DNA-binding56.94.7e-185699146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      r ++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Migut.D02049.1.p 56 RSPFTEEEEEQLLACHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.456150IPR017930Myb domain
SMARTSM007175.1E-15352IPR001005SANT/Myb domain
PfamPF002498.0E-17449IPR001005SANT/Myb domain
SuperFamilySSF466893.48E-30497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26557IPR009057Homeodomain-like
CDDcd001671.62E-13748No hitNo description
PROSITE profilePS5129426.09351105IPR017930Myb domain
SMARTSM007172.3E-1655103IPR001005SANT/Myb domain
PfamPF002494.1E-155698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2158104IPR009057Homeodomain-like
CDDcd001674.28E-125898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLRELVE RYGPHNWNSI ALNLPSRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEEQLLAC HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MSRKFRQNHQ NSKNTTTHKF  120
PHHRILYNNY RLPHRITDKP VHHHNINMDQ GDSRKKEVEF YDFLRVNTDS INGSEVIDDD  180
GIPRNDNNEE VEQESGRAAL PPFIDFLSVM GNHSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3241057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829267.11e-161PREDICTED: transcription factor MYB82-like
SwissprotQ9FX362e-73MYB54_ARATH; Transcription factor MYB54
TrEMBLA0A022PU601e-112A0A022PU60_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.17e-76myb domain protein 54
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]