PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02076.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 564aa    MW: 63974.3 Da    PI: 7.1781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-1141935592374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+av+s++++ a++lL++++ ++sp+gd ++Rla+yf+ AL+arla+++ + y    ++  s    +e l+a+k++  ++P+ k+s
  Migut.D02076.1.p 193 RTLLTQCAQAVASNETRTATELLSQIKRHSSPHGDGTERLAHYFAGALEARLAGTGGTFY----SRGIS---AAEILKAYKTYITACPFRKMS 278
                       579***************************************************444444....55555...7899***************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +l aN++I + ++g++++HiiDf+i +G+QWp+L++aL++Rp+gpp+lRiTg++ p++g   + ++  tg+rLak++e+++vpfe+n+ +a++
  Migut.D02076.1.p 279 NLYANKTIKKLADGATTLHIIDFGILYGFQWPCLIHALSERPDGPPKLRITGIDFPQPGlrPAARVGDTGRRLAKYCERFKVPFEYNA-IAQK 370
                       ************************************************************99**************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       ++++++e+L+++++E l+Vn+ ++lh+++de+v ++s+rd+vL+l+k+++P+++++   +  +n++ F +rf eal+ ys+lfd+++a++pre
  Migut.D02076.1.p 371 WDTIKIEDLKIERNELLVVNSLYRLHNVPDETVMVNSPRDTVLELIKKVNPDLFIHGVVNGTYNTPFFTTRFREALYQYSSLFDMFDATVPRE 463
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       +++r+  E+e+lg++++n++aceg+er+ r et+++W  r  +aGF++vpl+ ++ k +++ ++k + + ++v+e+ +++++gWk+r + ++S
  Migut.D02076.1.p 464 DQNRMRFEEEVLGKDVMNIIACEGTERVDRPETYKQWGVRSARAGFEQVPLDRDILKYVRSKVKKNYHKDFSVDEDGKWMLQGWKGRVVHAIS 556
                       *******************************************************************888*********************** PP

              GRAS 372 aWr 374
                        W+
  Migut.D02076.1.p 557 YWK 559
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.478166539IPR005202Transcription factor GRAS
PfamPF035143.6E-112193559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAMYLSQENH VFTYNCPSDG ISAEYSVPTN GSSSPVEYSS SSSSEGEGFK EKDHSDAMLK  60
FISQMLMEEE DLGNKPCMLH DCLALQATEK SLFDVLNTNN DDETPPDSSS YSRVKKNRYR  120
EDTDGLSGDD RRSNKQLADD KFSDESETLE MYDKVLLCSV LELESKDKKP SMKQLSRGNK  180
KKGIPAKETV DHRTLLTQCA QAVASNETRT ATELLSQIKR HSSPHGDGTE RLAHYFAGAL  240
EARLAGTGGT FYSRGISAAE ILKAYKTYIT ACPFRKMSNL YANKTIKKLA DGATTLHIID  300
FGILYGFQWP CLIHALSERP DGPPKLRITG IDFPQPGLRP AARVGDTGRR LAKYCERFKV  360
PFEYNAIAQK WDTIKIEDLK IERNELLVVN SLYRLHNVPD ETVMVNSPRD TVLELIKKVN  420
PDLFIHGVVN GTYNTPFFTT RFREALYQYS SLFDMFDATV PREDQNRMRF EEEVLGKDVM  480
NIIACEGTER VDRPETYKQW GVRSARAGFE QVPLDRDILK YVRSKVKKNY HKDFSVDEDG  540
KWMLQGWKGR VVHAISYWKP SHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-511965598375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827861.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-175SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G9I6F40.0A0A2G9I6F4_9LAMI; Uncharacterized protein
STRINGMigut.D02076.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]