PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02129.1.p
Common NameLOC105949069, MIMGU_mgv1a014387mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 192aa    MW: 22060.9 Da    PI: 10.1786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-173075148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg++Tt E++l +++++++G++ W++Iar+++ gRt++++k++w++++
  Migut.D02129.1.p 30 RGKMTTHEEKLVLELHNKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 75
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.379124IPR017877Myb-like domain
SuperFamilySSF466891.43E-211083IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-91037IPR009057Homeodomain-like
PROSITE profilePS5129424.3042579IPR017930Myb domain
SMARTSM007171.5E-152977IPR001005SANT/Myb domain
PfamPF002494.0E-153074IPR001005SANT/Myb domain
CDDcd001677.77E-113275No hitNo description
Gene3DG3DSA:1.10.10.601.9E-183876IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MFYVVVAGLK RTGKSCRLRW VNYLHPGLKR GKMTTHEEKL VLELHNKWGN RWSRIARKIP  60
GRTDNEIKNY WRTHMRKKAQ DQKKTKRMIS PSLSSSSSSS FSNSSTSSIS NNSRPNAGPT  120
VDSSSRANTA GEKEEEISTK VYSMDEIWKD IELSEESSNF KCQEMISHTW DMLMQPIGDD  180
NFHSLPFYNH I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-1727927105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-1727981159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-1727981159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-1727927105C-Myb DNA-Binding Domain
1msf_C1e-1727927105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02129.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593956e-40KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827789.11e-141PREDICTED: transcription factor MYB48
SwissprotQ4JL843e-49MYB59_ARATH; Transcription factor MYB59
SwissprotQ9LX824e-49MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A022PVX01e-140A0A022PVX0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-48myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]