PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02129.2.p
Common NameLOC105949069, MIMGU_mgv1a014387mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 160aa    MW: 18344.4 Da    PI: 8.4863
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02129.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      Tt E++l +++++++G++ W++Iar+++ gRt++++k++w++++
  Migut.D02129.2.p  2 TTHEEKLVLELHNKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 43
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-10145IPR001005SANT/Myb domain
PROSITE profilePS5129422.262147IPR017930Myb domain
CDDcd001671.47E-10143No hitNo description
PfamPF002495.0E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-18244IPR009057Homeodomain-like
SuperFamilySSF466893.35E-12251IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTTHEEKLVL ELHNKWGNRW SRIARKIPGR TDNEIKNYWR THMRKKAQDQ KKTKRMISPS  60
LSSSSSSSFS NSSTSSISNN SRPNAGPTVD SSSRANTAGE KEEEISTKVY SMDEIWKDIE  120
LSEESSNFKC QEMISHTWDM LMQPIGDDNF HSLPFYNHI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02129.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593955e-40KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827789.11e-114PREDICTED: transcription factor MYB48
SwissprotQ9LX826e-28MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A022PVX01e-113A0A022PVX0_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.12e-28myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]