PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D02201.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 284aa MW: 32551.1 Da PI: 7.5704

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D02201.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.6	8.7e-48	13	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppG+rFhP+deel+++yL++kv+ +l+ +vi+++++y+++PwdLp k++ a+e+ewyfF++rd+ky++g r+nr++ sgyWkatg dk++l Migut.D02201.1.p 13 PPGIRFHPSDEELISYYLHRKVNYLPLPP-NVITDIHLYSYNPWDLPrKALFAGEEEWYFFTPRDRKYPNGGRPNRTAVSGYWKATGIDKPIL 104 9***********************999.99***********667777999********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+kktLvfykg+ p+g k +W+m eyrl Migut.D02201.1.p 105 NStGSRKIGVKKTLVFYKGKPPNGIKMNWIMIEYRL 140 9978899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-59	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.47	12	163	IPR003441	NAC domain
Pfam	PF02365	9.4E-25	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEEKNRFSDV EYPPGIRFHP SDEELISYYL HRKVNYLPLP PNVITDIHLY SYNPWDLPRK 60 ALFAGEEEWY FFTPRDRKYP NGGRPNRTAV SGYWKATGID KPILNSTGSR KIGVKKTLVF 120 YKGKPPNGIK MNWIMIEYRL PHTCPSKGSM RLDDWVLCRV RQKGNKSKNI IAQEDEPPSL 180 CRENRRDMLA DYLLSTEYHI IASLLIGHDP GLLTIPGTIR EQIITSENIN TEENFSLLES 240 FSDSVQTTSL SGKTVATMDT NSYCQHTNMK ELDIPALLSD NFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	1	169	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	1	169	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	1	169	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	1	169	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	1	169	9	174	NAC domain-containing protein 19
3swm_B	1e-59	1	169	9	174	NAC domain-containing protein 19
3swm_C	1e-59	1	169	9	174	NAC domain-containing protein 19
3swm_D	1e-59	1	169	9	174	NAC domain-containing protein 19
3swp_A	1e-59	1	169	9	174	NAC domain-containing protein 19
3swp_B	1e-59	1	169	9	174	NAC domain-containing protein 19
3swp_C	1e-59	1	169	9	174	NAC domain-containing protein 19
3swp_D	1e-59	1	169	9	174	NAC domain-containing protein 19
4dul_A	1e-59	1	169	6	171	NAC domain-containing protein 19
4dul_B	1e-59	1	169	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D02201.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552291.1	1e-115	NAC domain-containing protein 18-like isoform X2
Swissprot	Q8H4S4	1e-71	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A022PX78	1e-148	A0A022PX78_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.D02201.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-68	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Migut.D02201.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]