PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00181.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 323aa    MW: 36641.7 Da    PI: 5.8199
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00181.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-082642982155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Migut.E00181.2.p 264 KWPYPTEGDKMSLAELTGLDQKQINNWFINQRKRH 298
                       679*****************************885 PP
2ELK26.21.8e-09218239122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++Llr Y+ +++sLk EFs
  Migut.E00181.2.p 218 ELKDRLLRQYGNHINSLKLEFS 239
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.9E-2097141IPR005540KNOX1
PfamPF037903.3E-1999138IPR005540KNOX1
SMARTSM012563.3E-5148189IPR005541KNOX2
PfamPF037911.7E-6155186IPR005541KNOX2
SMARTSM011888.2E-5218239IPR005539ELK domain
PROSITE profilePS512139.847218238IPR005539ELK domain
PfamPF037897.5E-6218239IPR005539ELK domain
PROSITE profilePS5007112.746238301IPR001356Homeobox domain
SuperFamilySSF466892.78E-19239313IPR009057Homeodomain-like
SMARTSM003892.9E-12240305IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27243302IPR009057Homeodomain-like
CDDcd000861.14E-11250302No hitNo description
PfamPF059204.9E-17258297IPR008422Homeobox KN domain
PROSITE patternPS000270276299IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDEMYGIHHS IGYDYSDKGF MSPDENLMIA AAEYGGGEYT YDYHHHHQLI PSSADHRHRI  60
PAVFESSSSA AATAASESAS FSVHNEGDRK YQAANSDSIK ARIASHPSYP KLLDAYIDCQ  120
KVGATPEIAS LLDEIRRDKD VSKPADTSSL CFGFDPELDA FMTDLSRPFN EATSFLNTIQ  180
TQLSNLICKD NGALSSDEEA SGGETEMDDH QTRIEDRELK DRLLRQYGNH INSLKLEFSK  240
KRKKGKLPKE ARQTLLEWWN VHYKWPYPTE GDKMSLAELT GLDQKQINNW FINQRKRHWK  300
PSENMHLAMM DSLSARHFCV ED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233242LKLEFSKKRK
2239243KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00181.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855414.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-107KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G9GWW11e-125A0A2G9GWW1_9LAMI; Transcription factor MEIS1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-103KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]