PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00254.1.p

Common Name

MIMGU_mgv1a013120mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 231aa MW: 26025.4 Da PI: 5.7176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00254.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.8e-15	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L ++++Y++ Lq Migut.E00254.1.p 46 RSKHSVTEQRRRSKINERFQVLRKLIPHS----DQKRDTASFLLEVIQYVQFLQ 95 889***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-18	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-21	43	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.164	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-12	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-13	46	99	No hit	No description
SMART	SM00353	5.5E-11	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRSGKSNREE EEEEEDDEDS GTQKDANPSN NSTRDGKNSD KANAMRSKHS VTEQRRRSKI 60 NERFQVLRKL IPHSDQKRDT ASFLLEVIQY VQFLQQNVQN YEESYRPSSS EPTKLMPWRN 120 SHLRADPSST LHGKFDRGQH IPIESIDTPS DAQPSNGLNN QEDLIIEGGT IGISGVYSQR 180 LLNSFTQALE STGVDLSQAT ISVQINLGKR ANKDQSTSED LDQSQKRFKT *

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00254.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348644.1	3e-84	PREDICTED: transcription factor BIM2-like isoform X2
Swissprot	Q9CAA4	4e-70	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A022Q5T0	1e-168	A0A022Q5T0_ERYGU; Uncharacterized protein
STRING	Migut.E00254.1.p	1e-169	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	9e-62	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Migut.E00254.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]