PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00356.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB_related

Protein Properties

Length: 261aa MW: 29912.1 Da PI: 5.0832

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00356.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ +G g+W++ ar g++Rt+k+c++rw++yl Migut.E00356.1.p 31 RGPWTLEEDNLLIQYIRSHGEGSWNSSARFAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-22	23	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.356	26	82	IPR017930	Myb domain
SMART	SM00717	1.7E-13	30	80	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-16	31	78	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.85E-21	32	105	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-10	33	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.2E-5	81	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MNTKGRINNP KSKKLYDELS DNKSDHEELR RGPWTLEEDN LLIQYIRSHG EGSWNSSARF 60 AGLKRTGKSC RLRWLNYLKP DIKRGNLSLQ EQLLILELHS KWGNSKKFLE AIRMFWMPRL 120 LEKMQQDTSS SSSSIETQKH AAKSEAKAEA EAEAPPFSPV SKQPTTTNNN NIININNNNN 180 IIINSEDDSN SLFEDNNYYV GFPNYETMME ELELEEAAQG NSLLCGRHVL QNDWFGDEDL 240 GSSTTSFWNT DELWQNSKGW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-12	28	104	24	99	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00356.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012845948.1	1e-139	PREDICTED: LOW QUALITY PROTEIN: myb-related protein 305

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	2e-37	myb domain protein 62

Link Out ? help Back to Top
Phytozome	Migut.E00356.1.p