PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00382.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

DBB

Protein Properties

Length: 400aa MW: 46469.4 Da PI: 6.0719

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00382.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	7	47	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e +C+ ++ + + +C+ + +lC +C ++ H+ H Migut.E00382.1.p 7 EERCEFCKALRPIVYCKADAAYLCLSCDSKVHSAnalsfrH 47 689****99*******************656666666 PP
2	zf-B_box	22	3.3e-07	51	85	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38 +C+ +++ ++ C+ ++++C++C + +H++H+ Migut.E00382.1.p 51 LVCESCNSLPAAVRCFAHRMFMCQTCDDIIHRRHR 85 58********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	8.774	5	52	IPR000315	B-box-type zinc finger
SMART	SM00336	2.5E-6	5	52	IPR000315	B-box-type zinc finger
CDD	cd00021	2.20E-4	9	52	No hit	No description
CDD	cd00021	1.63E-5	52	85	No hit	No description
SMART	SM00336	4	53	89	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSNSTMEERC EFCKALRPIV YCKADAAYLC LSCDSKVHSA NALSFRHPRT LVCESCNSLP 60 AAVRCFAHRM FMCQTCDDII HRRHRDDVVG FPHQKKVIGC YMGCPSARDL ASLWGFDFNE 120 LHNNSIIECE GGFSSRGTKV VEDDERDQHR YSILQQILYL ERLQLSEEID GPHSLHIKEH 180 KTLNNNNNNN NNPMDNFDGN LEFQQKEYSL EEKTDASSFS QLDHLASNNG NHHLHGDNSF 240 WQYKSPSHNN EIWLQNMQDL GVCDEVQCFD NDDVNIPDID LTFRNFEELF RNEHDPSFKL 300 DQDPSFGFGT TIEHYNDYNQ LQTMINNPSY YSAYQYQDGT SYDSKRSNFH GNENVIMRNK 360 EKKALRHEKQ AYYTSPKSKS EIKKRGKGEV CYRWNYALY*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSNSTMEERC EFCKALRPIV YCKADAAYLC LSCDSKVHSA NALSFRHPRT LVCESCNSLP  60
AAVRCFAHRM FMCQTCDDII HRRHRDDVVG FPHQKKVIGC YMGCPSARDL ASLWGFDFNE  120
LHNNSIIECE GGFSSRGTKV VEDDERDQHR YSILQQILYL ERLQLSEEID GPHSLHIKEH  180
KTLNNNNNNN NNPMDNFDGN LEFQQKEYSL EEKTDASSFS QLDHLASNNG NHHLHGDNSF  240
WQYKSPSHNN EIWLQNMQDL GVCDEVQCFD NDDVNIPDID LTFRNFEELF RNEHDPSFKL  300
DQDPSFGFGT TIEHYNDYNQ LQTMINNPSY YSAYQYQDGT SYDSKRSNFH GNENVIMRNK  360
EKKALRHEKQ AYYTSPKSKS EIKKRGKGEV CYRWNYALY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00382.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846012.1	0.0	PREDICTED: putative zinc finger protein At1g68190
TrEMBL	A0A022QQ14	0.0	A0A022QQ14_ERYGU; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	5e-36	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Migut.E00382.1.p