PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00601.1.p
Common NameMIMGU_mgv1a024345mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 574aa    MW: 64063 Da    PI: 9.2288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00601.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06122144427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C ff++ G+C  Gd C+F H+p
  Migut.E00601.1.p 122 VPCIFFQK-GHCVKGDWCHFLHVP 144
                       79******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1222150IPR000571Zinc finger, CCCH-type
SMARTSM003560.0222249IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-102475No hitNo description
PROSITE profilePS5010310.4185278IPR000571Zinc finger, CCCH-type
SMARTSM003560.785477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005118145IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-4119144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.34E-5121142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4123144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAGAPPPPSQ SQPLSAEEEA LKSSMDCVYF LASPLTCKKG SECEYRHSDV ARINPRDCWF  60
WVHGNCLNPR CSFRHPPFDG LPGTQTATSA GPSVPVTHVP ATQPAITPTP HVTPHASAKQ  120
GVPCIFFQKG HCVKGDWCHF LHVPNSLNNK ASTVAGTSSA AEPATLKKAF SGTEKPVQEK  180
KVVLPASVPK PVKDSTRANP IVEVEAPPRN EFAVNRRAPQ TSSHNDFPRY RTTPPVTNGT  240
PVSWSNRVQP PHLLDGPESM NSKEAEEVSR EPSPGFDVLV DDEGRDSDYY PGEDRYGMPR  300
EHESRNEYDM GHSIDYNAIA ALDDDRYQDP VGYNSHDHHK GQYGWDPRRA SSERMSGGSY  360
HERRPHARRD NVSQVDELDL RHRLAKQKRQ NGLRSVISHE HARDMEVRDR SYHGSSHRDE  420
KHYSLNETSL SSRLRGRIRM PGRSISPNER DMVRGGDRSR RSPVRASISP YKAGIRDKIQ  480
SRVGEAFNNG GRNNYTGQHM RRDFAGDNNK ADFAPPKSLA ELKNRKNAEP SRRHLSDQQS  540
LGKRKHSILD VEHQQIGGGG VSFEGPKPLQ EIRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00601.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846007.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A022QNG80.0A0A022QNG8_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633