PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00661.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C3H

Protein Properties

Length: 641aa MW: 71215.1 Da PI: 6.0617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00661.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.9e-06	85	107	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C Gd C+F H+p Migut.E00661.1.p 85 VPCIFFQK-GHCVKGDWCHFLHVP 107 79****.***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.005	81	108	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.1E-4	82	107	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.97E-5	84	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	86	107	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MAGAPPPPSQ SQPLSAEEEA LKSSMDCVYF LASPLTCKKP FDGLPGTQTA TSAGPSVPVT 60 HVPATQPAIT PTPHVTPHAS AKQGVPCIFF QKGHCVKGDW CHFLHVPNSL NNKASTVAGT 120 SSAAEPATLK KAFSGTEKPV QEKKVVLPAS VPKPVKDSTR ANPIVEVEAP PRNEFAVNRR 180 APQTSSHNDF PRYRTTPPVT NGTPVSWSNR VQPPHLLDGP ESMNSKEAEE VSREPSPGFD 240 VLVDDEGRDS DYYPGEDRYG MPREHESRNE YDMGHSIDYN AIAALDDDRY QDPVGYNSHD 300 HHKGQYGWDP RRASSERMSG GSYHERRPHA RRDNVSQVDE LDLRHRLAKQ KRQNGLRSVI 360 SHEHARDMEV RDRSYHGSSH RDEKHYSLNE TSLSSRLRGR IRMPGRSISP NERDMVRGGD 420 RSRRSPVRAS ISPYKAGIRD KIQSRVGEAF NNGGRNNYTG QHMRRDFAGD NNKADFAPPK 480 SLAELKNRKN AEPSRRHLSD QQSLGKRKHS ILDVEHQQIG GGGVSFEGPK PLQEILKRKR 540 GERSGIAEEE GIITDDKNVE EAADKIDKEE SSPAEEGILV EDGVNLEAEV YEPREGESDY 600 EHVDGEDYEL YDGENGEDEG EYPDEEDDGD EFAKKMGVMY *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MAGAPPPPSQ SQPLSAEEEA LKSSMDCVYF LASPLTCKKP FDGLPGTQTA TSAGPSVPVT  60
HVPATQPAIT PTPHVTPHAS AKQGVPCIFF QKGHCVKGDW CHFLHVPNSL NNKASTVAGT  120
SSAAEPATLK KAFSGTEKPV QEKKVVLPAS VPKPVKDSTR ANPIVEVEAP PRNEFAVNRR  180
APQTSSHNDF PRYRTTPPVT NGTPVSWSNR VQPPHLLDGP ESMNSKEAEE VSREPSPGFD  240
VLVDDEGRDS DYYPGEDRYG MPREHESRNE YDMGHSIDYN AIAALDDDRY QDPVGYNSHD  300
HHKGQYGWDP RRASSERMSG GSYHERRPHA RRDNVSQVDE LDLRHRLAKQ KRQNGLRSVI  360
SHEHARDMEV RDRSYHGSSH RDEKHYSLNE TSLSSRLRGR IRMPGRSISP NERDMVRGGD  420
RSRRSPVRAS ISPYKAGIRD KIQSRVGEAF NNGGRNNYTG QHMRRDFAGD NNKADFAPPK  480
SLAELKNRKN AEPSRRHLSD QQSLGKRKHS ILDVEHQQIG GGGVSFEGPK PLQEILKRKR  540
GERSGIAEEE GIITDDKNVE EAADKIDKEE SSPAEEGILV EDGVNLEAEV YEPREGESDY  600
EHVDGEDYEL YDGENGEDEG EYPDEEDDGD EFAKKMGVMY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00661.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839586.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBL	A0A022R795	0.0	A0A022R795_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4024	16	33

Link Out ? help Back to Top
Phytozome	Migut.E00661.1.p