PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00754.1.p
Common NameLOC105964543, MIMGU_mgv1a019497mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 135aa    MW: 15530.7 Da    PI: 7.4516
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00754.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.16e-33111111101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rr+C ++C la+yfpae++ +f+ v +l+G++n lk+lk+++eeer+++++sl++eA++r++ Pv+G ++v +kl+ +++++++e
  Migut.E00754.1.p  11 ACAACKHQRRRCDANCELAKYFPAEKADDFEDVYHLYGMQNTLKILKSVDEEERDKTIESLIMEAKMRLEYPVHGHFSVARKLSIEIDKAEKE 103
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+ +++++
  Migut.E00754.1.p 104 LEFVRRQI 111
                       **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.240.109.7E-4825IPR001138Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profilePS5089121.81810111IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3111108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MANALPVVYK ACAACKHQRR RCDANCELAK YFPAEKADDF EDVYHLYGMQ NTLKILKSVD  60
EEERDKTIES LIMEAKMRLE YPVHGHFSVA RKLSIEIDKA EKELEFVRRQ IQLFRGSDNR  120
AGPSTRREGQ PDQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1721112111LOB family transfactor Ramosa2.1
5ly0_B7e-1721112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00754.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844509.17e-97PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A022S1Y52e-95A0A022S1Y5_ERYGU; Uncharacterized protein
STRINGMigut.E00754.1.p3e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-28LOB domain-containing protein 27