PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00961.1.p

Common Name

MIMGU_mgv1a018163mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 259aa MW: 28140.5 Da PI: 5.1344

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00961.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	115.2	3.2e-36	64	155	2	93
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re d+++P +n++ im+ +l + ki++dake +q cvsefi f+t+ea+++c+r+ rkt++++d+l a+++lGf dy++pl v+l+k+r Migut.E00961.1.p 64 READQYMPTTNIAGIMRCILADHVKIADDAKEAIQVCVSEFINFITAEANNRCHRDYRKTVTPEDVLAAMTSLGFGDYIDPLIVFLNKHRAQ 155 899**************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-38	57	163	IPR009072	Histone-fold
SuperFamily	SSF47113	2.1E-28	67	168	IPR009072	Histone-fold
Pfam	PF00808	4.6E-18	69	133	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.0E-11	97	115	No hit	No description
PRINTS	PR00615	8.0E-11	116	134	No hit	No description
PRINTS	PR00615	8.0E-11	135	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MERGGSSNIE HKYTRRACTS GIVIREGGVP NVVATATNVV NIPDAPTNAT PGEVNQEQHQ 60 GVKREADQYM PTTNIAGIMR CILADHVKIA DDAKEAIQVC VSEFINFITA EANNRCHRDY 120 RKTVTPEDVL AAMTSLGFGD YIDPLIVFLN KHRAQQDLER GSMTQLGQFV RRDDDNGGFV 180 NHQQLQGAHM VRSPPAPAPL AAPTMGYYVP LPPPVAGTME DGEELGGSTR AINAYMSCNY 240 GRGEGSSESP EFDPFQKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-34	64	153	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00961.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012841021.1	1e-179	PREDICTED: nuclear transcription factor Y subunit beta-like
TrEMBL	A0A022R339	0.0	A0A022R339_ERYGU; Uncharacterized protein
STRING	Migut.E00961.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6044	4	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	4e-39	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Migut.E00961.1.p