PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E01158.1.p

Common Name

MIMGU_mgv1a018804mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 101aa MW: 11527.3 Da PI: 6.9196

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E01158.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.8	5.3e-31	9	99	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rr+C ++C la+yfpae++ +f+ v +l+G+ n lk+lk+++eeer++a++sl++eA++r++ Pv+G ++v +kl+ ++++++ Migut.E01158.1.p 9 ACAACKHQRRRCDANCELAKYFPAEKADDFEDVYHLYGMPNTLKILKSIEEEERDKAIESLIMEAKMRLEYPVHGHFSVARKLSIEIDKAE 99 7**********************************************************************************99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.240.10	7.4E-4	7	23	IPR001138	Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profile	PS50891	21.072	8	100	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-29	9	99	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000981	Molecular Function	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MANAVPQKAC AACKHQRRRC DANCELAKYF PAEKADDFED VYHLYGMPNT LKILKSIEEE 60 ERDKAIESLI MEAKMRLEYP VHGHFSVARK LSIEIDKAEK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-16	10	100	12	102	LOB family transfactor Ramosa2.1
5ly0_B	4e-16	10	100	12	102	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E01158.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844519.1	7e-65	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A022RZ44	1e-63	A0A022RZ44_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.E01158.1.p	3e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-23	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Migut.E01158.1.p