PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E01297.1.p

Common Name

MIMGU_mgv1a021100mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ERF

Protein Properties

Length: 232aa MW: 25302.3 Da PI: 4.9778

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E01297.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.2	6.5e-16	61	108	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg++ ++e+Aa+a++ a+++l+g Migut.E01297.1.p 61 YRGIR--SRTGKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 108 99995..789*******843...5*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.5E-25	60	117	IPR001471	AP2/ERF domain
SMART	SM00380	4.4E-24	60	122	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.915	60	116	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.01E-17	60	118	IPR016177	DNA-binding domain
Pfam	PF00847	3.8E-9	61	108	IPR001471	AP2/ERF domain
CDD	cd00018	3.68E-14	61	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSDSPHDQQP NNMIQQRHRP PSPYSPNSPT HSQSSPPKKI KKTTTSSAAA AAATNGKHPM 60 YRGIRSRTGK WVSEIREPRK TTRIWLGTYP SPEMAAAAYD VAALALKGGD VLLNFPDHVT 120 SFPVPSSPSP QDIRRAAADA AEMMRPAGGD TAADDRKLPR EDTEAAAAAE PPDNIVETII 180 DEFIDEEALF YMPNLLLDMA EGMLVSLPRM AFRPPEDSPE NSEGESLWSY F*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E01297.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846373.1	1e-169	PREDICTED: ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	2e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A022QRD9	1e-168	A0A022QRD9_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	6e-41	ERF family protein

Link Out ? help Back to Top
Phytozome	Migut.E01297.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]