PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01576.1.p
Common NameMIMGU_mgv1a009941mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YA
Protein Properties Length: 328aa    MW: 36235.3 Da    PI: 8.3031
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01576.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.61.3e-30178232358
         CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       p+YVNaKQy++Il+RRq Rakl +++kl +ks+kpylheSRh+hAl+R+RgsgGrF
  Migut.E01576.1.p 178 PVYVNAKQYHAILRRRQIRAKLVAQNKL-AKSKKPYLHESRHRHALKRARGSGGRF 232
                       9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-34174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.181175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-26178232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-23178200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-23209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQMFSDKESG RNTADSSYKA LFGSHLPMSF TNKEPAFSLS KSVSNETATT AEGDYHVKLS  60
ESTQYQEHDS SSTLSSGQSH HKAATSAKSN FHMQNSTFQP GSLDCTRPFL LYGNQDFVGH  120
HVQTEHHQSL GYISYPLGGS CYGRTGAAYE PNAIVYSQMI GVAPQRIVLP LDCTEGIPVY  180
VNAKQYHAIL RRRQIRAKLV AQNKLAKSKK PYLHESRHRH ALKRARGSGG RFLNTKNMQQ  240
QNLTSSIQTN HNNLCETDTW QISIASGSDE DAPPCIFNND GDFFQQLDSK SSGVHSHLAG  300
TDDRLVLLSM DIRARTDQHC HVIGCAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20178236462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216225RHRHALKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01576.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847050.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLA0A022QKT60.0A0A022QKT6_ERYGU; Uncharacterized protein
STRINGMigut.E01576.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-36nuclear factor Y, subunit A3