PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E01685.1.p

Common Name

MIMGU_mgv1a025838mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 190aa MW: 20891.6 Da PI: 5.2451

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E01685.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	114.1	7.5e-36	1	86	8	93
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +P +n++rim+ v+P + ki++dake +q cvsefi f+tsea+++c+r+ rkt++++d+l a+++lGf dy+epl v+l+k+r Migut.E01685.1.p 1 MPTTNITRIMRCVVPDHVKIADDAKEAIQVCVSEFINFITSEANNRCHRDYRKTVTPEDVLAAITSLGFGDYIEPLIVFLNKHRAQ 86 799********************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-37	1	96	IPR009072	Histone-fold
SuperFamily	SSF47113	3.73E-31	1	100	IPR009072	Histone-fold
Pfam	PF00808	1.8E-20	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.5E-12	28	46	No hit	No description
PRINTS	PR00615	6.5E-12	47	65	No hit	No description
PRINTS	PR00615	6.5E-12	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MPTTNITRIM RCVVPDHVKI ADDAKEAIQV CVSEFINFIT SEANNRCHRD YRKTVTPEDV 60 LAAITSLGFG DYIEPLIVFL NKHRAQQDLE RGSMNQLGQF VRRDDDNGGF VHQQQPQGAH 120 MVRSPPAPAP LAAPTMGYYV PLPPPVVGMV EDGEELGGST RVINAFMSCN YGRGEGSSDG 180 PEFDPFHKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-34	1	84	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E01685.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852535.1	1e-141	PREDICTED: nuclear transcription factor Y subunit beta-like
TrEMBL	A0A022Q9Z4	1e-139	A0A022Q9Z4_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.E01685.1.p	1e-140	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-35	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Migut.E01685.1.p