PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00379.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARR-B
Protein Properties Length: 305aa    MW: 32523.6 Da    PI: 6.3728
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.62.4e-22254303151
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       kp+++Wt+ LH++F+ea++++ G ++A+Pk+ile+m+v+gLt+e+v+SHLQ
  Migut.F00379.1.p 254 KPKVVWTNSLHNCFLEAIRSI-GLDRAVPKKILEVMNVPGLTRENVASHLQ 303
                       79*******************.***************************** PP
2Response_reg72.22e-24281351108
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       +l+vdD+ + + +++ +l+k +y +v +++++++al +l+ k   +Dl++ D+ mp+m+G+el + i++e  +lp+++++a ++e  al+ l+
  Migut.F00379.1.p  28 ILVVDDDTTCLAIVAAILKKFKY-QVVTVKHPRDALCTLRIKGgaFDLVVSDVHMPDMNGFELQQVIAQEF-NLPVVLMSADEKECVALKGLE 118
                       89*********************.9999*********99666566**********************9999.9******************** PP

                       TTESEEEESS--HHHHH CS
      Response_reg  92 aGakdflsKpfdpeelv 108
                        Ga  f+ Kp++p+++ 
  Migut.F00379.1.p 119 NGAAFFILKPVSPDDVK 135
                       *************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.27E-2924142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-3225169No hitNo description
SMARTSM004481.6E-2426138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.79227142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.8E-2128135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.70E-2329142No hitNo description
Gene3DG3DSA:1.10.10.603.4E-22251303IPR009057Homeodomain-like
PROSITE profilePS512949.832251304IPR017930Myb domain
SuperFamilySSF466899.14E-15252303IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22254304IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGEKNTLVS NSSELEVAKN SVNSNISILV VDDDTTCLAI VAAILKKFKY QVVTVKHPRD  60
ALCTLRIKGG AFDLVVSDVH MPDMNGFELQ QVIAQEFNLP VVLMSADEKE CVALKGLENG  120
AAFFILKPVS PDDVKDLWQF AAMKKKSTQV VIHEEAEEKT SEQDKNINSC NNNTNNNNEI  180
IAPAAASTGG AGGGSDRPDT GTGAGAGAGA GASSSGKEES SKNKKESKRK SPQKSDGNSD  240
ERKGETSQSG SQKKPKVVWT NSLHNCFLEA IRSIGLDRAV PKKILEVMNV PGLTRENVAS  300
HLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19251303254ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00379.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076492.21e-120two-component response regulator ARR10-like
TrEMBLA0A022QAT61e-138A0A022QAT6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-31response regulator 1