PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F00381.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ERF

Protein Properties

Length: 231aa MW: 24809.4 Da PI: 5.5975

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00381.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.6	2.7e-17	55	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r+++ g+Wv+eIr p++ ++r++lg++ t+e+Aa+a++ a+++l+g Migut.F00381.1.p 55 PVYRGIRYRS--GKWVSEIRQPRK---TTRVWLGTYPTPEMAAAAYDVAALALKG 104 68***976..*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.8E-12	55	104	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.007	56	112	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-26	56	113	IPR001471	AP2/ERF domain
SMART	SM00380	9.9E-27	56	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-18	56	113	IPR016177	DNA-binding domain
CDD	cd00018	4.57E-16	57	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDNNHQNYYY SSPNPLIIDY ENINSTTPIQ ENLSPPPSLR RQQPPVSSPT SGRHPVYRGI 60 RYRSGKWVSE IRQPRKTTRV WLGTYPTPEM AAAAYDVAAL ALKGPETALN FPDLAQSYPI 120 PDSHSAAGIR DAAAQAAAAV AAAPQTGGAG GHGRVVHAPP SENEAGSSSS GAPAPGHEFV 180 DEEALFYMPK LLEDMAEGML VSPPRMKSGA AADEESPEYY SRNDGLWSYR *

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00381.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851997.1	1e-168	PREDICTED: ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	3e-50	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A022QCS0	1e-140	A0A022QCS0_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-40	ERF family protein

Link Out ? help Back to Top
Phytozome	Migut.F00381.1.p

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]